PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g14050.1
Common NameLR48_Vigan09g122400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 225aa    MW: 25387.8 Da    PI: 6.8793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g14050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-083781345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E +l+ +a + + ++   +W+++a++++ g+t  +++  + 
   Vang03g14050.1 37 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKTVMDVVKQYK 81
                     8********************************.***998887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1213084IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-43182IPR009057Homeodomain-like
SMARTSM007172.5E-93486IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-123691IPR009057Homeodomain-like
CDDcd001671.32E-83783No hitNo description
PfamPF002499.1E-73781IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-4135162IPR009057Homeodomain-like
SuperFamilySSF466894.79E-5137164IPR009057Homeodomain-like
CDDcd001670.00245143169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
LCCDFGVMKW EMEILPPASP YMYNSNWLLD DNRTNTKWTP AENKLFENAL AVYDKDTPDR  60
WHKVAEMIPG KTVMDVVKQY KELEADVCNI EAGLIPIPGY STTTSPFTLD WVNTPGYDGF  120
KGLTAKRSSS GRPPEQERKK GVPWTEEEHK LFLLGLKKYG KGIAMALNPA HEQVFVSPYG  180
LNSYGFKVQG QSLHRSPLHE SSYLGPQTPN MVFQMQPSQH YSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-18381101183RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518898.11e-112PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H79e-68DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0L9VBX71e-113A0A0L9VBX7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S6991e-113A0A0S3S699_PHAAN; Uncharacterized protein
STRINGGLYMA18G07250.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4073522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-54MYB family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]